Patrick Filima

Patrick Filima

Research Software Engineer

Computational Neuroscientist

© 2026 Patrick Filima

Technical Stack & Competencies

Software engineering, neuroinformatics toolchains, observability, and medical AI

My skill set reflects an active cross-disciplinary practice combining hands-on software development with specialized computational neuroscience toolchains.

Rather than generalist keywords, these tools represent technologies I use daily to build production scientific software, process clinical MRI data, and deploy cloud observability systems.

Software Engineering & Architecture

Building resilient web, mobile, and cloud software for scientific and enterprise use cases.

Frontend & Mobile
ReactNext.jsReact NativeTypeScriptTailwind CSSState Management (Zustand/Redux)
Backend & APIs
Node.jsPythonRESTful APIsGraphQLAuthentication & Access Governance
Infrastructure & Data
DockerAWSFirebasePostgreSQLMongoDBCI/CD & Git Workflows

Neuroinformatics & Scientific Computing

Domain-specific tools, standards, and data processing pipelines for neuroimaging research.

Neuroimaging Toolchains
FSL (FIRST, BET, FLIRT/FNIRT)FreeSurferANTs / ANTsPySimpleITKMNE-PythonPyDICOM & Nibabel
Data Standards & Repositories
BIDS (Brain Imaging Data Structure)FAIR Data PrinciplesOpenNeuroDataset Governance
Analysis & Morphometry
Structural MRI MorphometrySubcortical Nuclei VolumetricsTask fMRI GLM AnalysisQuality Control (MRIQC)

Pipeline Observability & Diagnostics

Telemetry, logging, and error tracking systems for high-throughput distributed scientific computing.

Telemetry Stack
ElasticsearchLogstashKibana (ELK)Structured Log ParsingStack Trace Extraction
HPC & Distributed Workflows
Batch Job TelemetryContainer Runtime DiagnosticsHPC Cluster IntegrationReal-Time Push Alerts

Medical AI & Machine Learning

Developing and auditing machine learning architectures on medical imaging datasets.

Frameworks & Toolkits
PyTorchMONAITorchIOScikit-LearnSciPy / NumPy
Evaluation & Safety
Expected Calibration Error (ECE)Grad-CAM / Grad-CAM++SHAPLeave-One-Hospital-Out Validation

Technical Product & Research Leadership

Leading multi-stakeholder technical projects between researchers, engineers, and clinical partners.

Strategy & Execution
Workflow Discovery & User ResearchTechnical RoadmappingCross-Functional CoordinationOpen Science Community Leadership