Patrick Filima

Patrick Filima

Research Software Engineer

Computational Neuroscientist

© 2026 Patrick Filima

Experience & Engineering Track Record

Research software engineering, platform observability, and digital health

I design and build software systems for scientific research and healthcare organizations.

My experience spans full-stack web and mobile development, distributed pipeline monitoring, telemetry integration with Elasticsearch, and leading digital platforms for pan-African research networks.

Brainlife.io — University of Texas at Austin

Research Software Engineer

Remote / Austin, TX2025 – Present
Brainlife.io is a free, cloud-based platform for reproducible neuroimaging analysis, enabling researchers worldwide to run standardized workflows across distributed high-performance computing (HPC) and cloud clusters. My role centers on building tools that improve platform observability, researcher workflow tracking, and failure diagnostics across thousands of automated pipeline executions.
Collaborators:NeuroscientistsInfrastructure EngineersPlatform MaintainersAcademic Research Labs
Key Software Contributions

Brainlife Error Monitoring & Diagnostics Dashboard

Centralized telemetry, log aggregation, and error classification for distributed pipelines

High-throughput neuroimaging workflows frequently execute thousands of parallel batch jobs across heterogeneous compute resources. When a job failed, researchers previously had to inspect distributed text logs across disconnected nodes to locate the root cause.

Technical Implementation:
  • Architected and built the frontend monitoring interface in React and Next.js, integrating backend telemetry powered by Elasticsearch, Logstash, and Kibana (ELK).
  • Integrated automated log parsing services that classify failure categories (e.g., OOM faults, BIDS format mismatches, Docker container runtime crashes).
  • Engineered interactive diagnostic views allowing researchers to inspect full execution stack traces, container environment variables, and historical run health.
Outcomes & System Impact:
  • Centralized failure triage across distributed HPC and cloud compute nodes
  • Eliminated manual, multi-system log inspection for platform users
  • Provided actionable error reporting that helps research teams resolve dataset and memory configuration issues quickly

Brainlife Mobile

Real-time mobile companion app for long-running compute job monitoring

Neuroimaging pipelines often run for days across remote clusters. Researchers lacked a practical way to check job progress or receive failure alerts when away from their lab workstations.

Technical Implementation:
  • Developed a cross-platform mobile application using React Native, communicating with Brainlife REST APIs.
  • Built background push notification services for instant alerts on job completions, cluster bottlenecks, and execution aborts.
  • Designed mobile-optimized diagnostic views to inspect failed job summaries and resource utilization on the go.
Outcomes & System Impact:
  • Enabled remote 24/7 oversight of long-running computational jobs
  • Provided researchers with immediate notifications upon execution completion or failure
  • Reduced idle pipeline waiting time through timely notification alerts
Stack & Tools:
ReactNext.jsReact NativeTailwind CSSNode.jsPythonREST APIsDockerELK Stack (Elasticsearch, Logstash, Kibana)NeuroinformaticsBIDSHPC Workflows
African Brain Data Network (ABDN)

Neuroinformatics & Technical Product Lead

Remote / Pan-African2023 – Present
The African Brain Data Network builds research infrastructure, training programs, and digital platforms to strengthen neuroscience and data governance across Africa. I lead the technical development of digital platforms used by researchers, fellowship applicants, and educators across the continent, working closely with scientific leadership to translate community needs into scalable software.
Collaborators:Neuroscience ResearchersTeaching AssistantsCliniciansRegional Academic Committees
Key Software Contributions

Fellowship Applicant Evaluation Platform

Multi-stage candidate review and scoring system for pan-African academic programs

Managing fellowship applications from dozens of African countries involved manual spreadsheet workflows that were prone to inconsistencies and difficult to coordinate across regional reviewer teams.

Technical Implementation:
  • Architected and implemented a full-stack candidate evaluation platform using Next.js and Firebase.
  • Engineered multi-stage candidate scoring rubrics, reviewer assignment matrices, and secure document access controls.
  • Built real-time administrative dashboards tracking application throughput, reviewer progress, and score distributions.
Outcomes & System Impact:
  • Digitized admissions workflows for 1,000+ applicants across 50 African countries
  • Standardized multi-reviewer scoring criteria across distributed academic evaluation teams
  • Replaced manual spreadsheet tracking with a secure, centralized review portal

FAIR Data Platform & Community Infrastructure

Open science repository and resource hub aligned with international FAIR standards

African neuroscience data and educational resources were historically fragmented across individual institutions, limiting discoverability and cross-border collaboration.

Technical Implementation:
  • Developed web infrastructure for sharing neuroscience datasets, educational modules, and technical workshop materials.
  • Implemented metadata schemas adhering to Findable, Accessible, Interoperable, and Reusable (FAIR) data principles.
  • Integrated content workflows for community announcements, regional symposiums, and resource discovery.
Outcomes & System Impact:
  • Established a centralized digital hub connecting neuroscience researchers across the continent
  • Fostered adoption of FAIR data practices and open-access scientific resources
Stack & Tools:
Next.jsReactTailwind CSSFirebaseNode.jsPythonFAIR Data PrinciplesNeuroinformaticsAccess Governance
African NeuroData Research Lab (ANR Lab)

Technical Product Lead

Remote / Port Harcourt, Nigeria2025 – Present
Leading the digital infrastructure for a neuroscience collaboration platform designed to improve scientific communication, resource sharing, and FAIR research practices across regional laboratories.
Collaborators:Lab DirectorsNeuroscience ResearchersInstitutional Partners
Key Software Contributions

Pan-African Collaboration Portal

Standardized dataset cataloging and scientific communication infrastructure

Regional laboratories required a shared platform to catalog local clinical MRI datasets and coordinate multi-center research studies.

Technical Implementation:
  • Architected Next.js collaboration portal with standardized data cataloging schemas.
  • Implemented researcher directory, project workspaces, and secure dataset request workflows.
Outcomes & System Impact:
  • Created unified repository for multi-center research coordination
  • Facilitated dataset sharing across regional partner institutions
Stack & Tools:
Next.jsReactFirebasePythonFAIR Data StandardsDataset Governance
Egyptian Neuroscience Network

Technical Product Lead

Remote / Egypt & MENA2026 – Present
Leading development of the Egyptian Neuroscience Network platform supporting more than 2,100 researchers, clinicians, educators, and students across Egypt and the MENA region.
Collaborators:ResearchersCliniciansEducatorsNeuroscience Students
Key Software Contributions

Regional Educational & Community Portal

Digital ecosystem for scientific networking, event distribution, and training

Connecting a growing regional community of over 2,100 neuroscientists and clinicians through centralized event management and academic resources.

Technical Implementation:
  • Built responsive web platform with member directory search and academic resource hubs.
  • Integrated event management workflows for webinars, workshops, and regional scientific symposiums.
Outcomes & System Impact:
  • Connected 2,100+ community members across Egypt and the MENA region
  • Streamlined event registration and educational material dissemination
Stack & Tools:
Next.jsReactNode.jsPostgreSQLCommunity PlatformsEducational Technology
Lizard Global

Software Engineer

Remote / Netherlands & Malaysia2022 – 2024
Developed commercial web and mobile applications for international startups and enterprise clients in cross-functional agile teams.
Collaborators:Product ManagersUI/UX DesignersEnterprise Clients
Key Software Contributions

Aposto & Flexpackerz Platforms

Workforce management and location-based mobile services

Built custom mobile and web tools for real-time staff shift allocation and remote co-working discovery.

Technical Implementation:
  • Engineered cross-platform mobile apps in React Native with location APIs and Firebase authentication.
  • Developed admin dashboards in Next.js for event-day workforce management.
Outcomes & System Impact:
  • Delivered production applications deployed to international client bases
  • Integrated geolocation and real-time data sync across platforms
Stack & Tools:
React NativeFirebaseNext.jsReact.jsAnt DesignStrapi