Patrick Filima

Patrick Filima

Research Software Engineer

Computational Neuroscientist

© 2026 Patrick Filima
Back to Projects & Experience
Digital Research PlatformIn Production
License: Open Access

African Brain Data Network (ABDN) Platform

FAIR Data Management, Capacity Building & Participant Evaluation Platform for African Neuroscience

Next.jsPythonPostgreSQLAppwriteTailwind CSSFAIR Data Protocols
Core Research Ecosystem Vision

A digital research platform enabling neuroscientists across 50+ African institutions to collaborate, share FAIR datasets, and manage computational workshops.

Execution Commands & Pipeline Workflow

# 1. Train MONAI 3D DenseNet-121 Benchmark:
python src/models/cnn.py --model densenet121 --task task4 --epochs 50 --batch_size 4 --out_dir ./checkpoints/densenet
# 2. Evaluate Degradation Robustness & RRI Metrics:
python src/evaluation/metrics.py --evaluate_robustness --model_dir ./checkpoints/ --out_dir ./results/
# 3. Generate Grad-CAM Explainability Heatmaps under Perturbation:
python src/evaluation/explain.py --model_path ./checkpoints/densenet/best.pth --method gradcam --out_dir ./results/explanations/